Sequencher V5.3 For Mac
Sequence Alignment Software Editor's Picks - a free and very popular free sequence alignment editor for Windows. Has not been actively developed for several years, but still gets excellent. A powerful sequence alignment program for Windows and Mac OS X. Free demo (no forms), 30-day fully functional trial. A free tool for sequence alignment and phylogenetic tree building and analysis. Integrated web interface for BLAST searches and GenBank browsing. Free Sequence Alignment Software - Perhaps the most commonly used tool for multiple sequence alignments.
Available with a graphical user interface (ClustalX) or with a command line interface (ClustalW). A newer multiple sequence alignment program that often gives alignments that Clustal, and is substantially faster for large data sets. No graphical user interface; public domain, available as source code. An older sequence alignment editor for Mac OS X. Not updated since 2002, but still popular.
Java implementation of the Smith-Waterman algorithm for pairwise alignments. Software for evolutionary biology. Most functions are for post-alignment analysis like phylogenetic tree analysis, but also useful to view and manipulate sequence alignments.
Commercial Software For Sequence Alignment - A widely used sequence alignment and assembly package that started out as a program for the 'classic' Macintosh. Prices for licenses are not listed at the web site, but typically start at several thousand dollars. A demo version is available after filling out a web form, but does not allow saving. Another popular program. Has separate modules for sequence assembly and multiple sequence alignments, as well as other modules for primer design, gene finding, and sequence editing.
Setting up Sequencher v4.7 for Mac OS 10.x Download Sequencher for Mac OS 10.x. If you are off campus and are prompted for a username and password, please contact Biology computer support for this information. Sequencher can easily generate unique visualizations of your RNA-Seq data with custom plots and charts giving you publication-ready graphics in seconds.Whether performing reference-guided alignments, de novo assembly, variant calling, or SNP analyses, Sequencher has. Database v08 for mac.
Trials available through web forms, prices comparable to Sequencher (depending on the number of modules purchased). Gained popularity when the program was made freely available to academic users, a policy that was ended in 2008. The current (4/18/09) for a 3-year academic license for Vector NTI is $1975.00 (with discounts of about 30% being offered). Another program package with many functions that has been around for a long time. Academic licenses $2,000, with discounts for additional licenses.
However, advanced assembly based on requires additional license fees. Newer software for sequence alignment and sequence assembly on Windows and Mac OS X.
Published, significantly less expensive than other popular packages. One useful and unique feature is the ability to align assembled contigs with Clustal or MUSCLE to create 'contigs of contigs'.